methylMnM

DOI: 10.18129/B9.bioc.methylMnM  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see methylMnM.

detect different methylation level (DMR)

Bioconductor version: 3.17

To give the exactly p-value and q-value of MeDIP-seq and MRE-seq data for different samples comparation.

Author: Yan Zhou, Bo Zhang, Nan Lin, BaoXue Zhang and Ting Wang

Maintainer: Yan Zhou<zhouy1016 at 163.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("methylMnM")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methylMnM")

 

PDF	R Script	methylMnM
PDF		Reference Manual

Details

biocViews	DNAMethylation, Sequencing, Software
Version	1.38.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL-3
Depends	R (>= 2.12.1), edgeR, statmod
Imports
LinkingTo
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SystemRequirements
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Depends On Me
Imports Me	SIMD
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methylMnM_1.38.0.tar.gz
Windows Binary	methylMnM_1.38.0.zip (64-bit only)
macOS Binary (x86_64)	methylMnM_1.38.0.tgz
macOS Binary (arm64)	methylMnM_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methylMnM
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methylMnM
Bioc Package Browser	https://code.bioconductor.org/browse/methylMnM/
Package Short Url	https://bioconductor.org/packages/methylMnM/
Package Downloads Report	Download Stats