metapod

DOI: 10.18129/B9.bioc.metapod  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see metapod.

Meta-Analyses on P-Values of Differential Analyses

Bioconductor version: 3.17

Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("metapod")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("metapod")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metapod")

 

HTML R Script Meta-analysis strategies
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialPeakCalling, MultipleComparison, Software
Version 1.8.0
In Bioconductor since BioC 3.13 (R-4.1) (2.5 years)
License GPL-3
Depends
Imports Rcpp
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown
SystemRequirements C++11
Enhances
URL
Depends On Me
Imports Me csaw, mumosa, scran
Suggests Me TSCAN
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metapod_1.8.0.tar.gz
Windows Binary metapod_1.8.0.zip
macOS Binary (x86_64) metapod_1.8.0.tgz
macOS Binary (arm64) metapod_1.7.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/metapod
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metapod
Bioc Package Browser https://code.bioconductor.org/browse/metapod/
Package Short Url https://bioconductor.org/packages/metapod/
Package Downloads Report Download Stats

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