DOI: 10.18129/B9.bioc.metabolomicsWorkbenchR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see metabolomicsWorkbenchR.

Metabolomics Workbench in R

Bioconductor version: 3.17

This package provides functions for interfacing with the Metabolomics Workbench RESTful API. Study, compound, protein and gene information can be searched for using the API. Methods to obtain study data in common Bioconductor formats such as SummarizedExperiment and MultiAssayExperiment are also included.

Author: Gavin Rhys Lloyd [aut, cre], Ralf Johannes Maria Weber [aut]

Maintainer: Gavin Rhys Lloyd <g.r.lloyd at>

Citation (from within R, enter citation("metabolomicsWorkbenchR")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Metabolomics, Software
Version 1.10.0
In Bioconductor since BioC 3.12 (R-4.0) (3 years)
License GPL-3
Depends R (>= 4.0)
Imports data.table, httr, jsonlite, methods, MultiAssayExperiment, struct, SummarizedExperiment, utils
Suggests BiocStyle, covr, knitr, HDF5Array, rmarkdown, structToolbox, testthat, pmp, grid, png
Depends On Me
Imports Me
Suggests Me fobitools
Links To Me
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Source Package metabolomicsWorkbenchR_1.10.0.tar.gz
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