DOI: 10.18129/B9.bioc.metabinR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see metabinR.

Abundance and Compositional Based Binning of Metagenomes

Bioconductor version: 3.17

Provide functions for performing abundance and compositional based binning on metagenomic samples, directly from FASTA or FASTQ files. Functions are implemented in Java and called via rJava. Parallel implementation that operates directly on input FASTA/FASTQ files for fast execution.

Author: Anestis Gkanogiannis [aut, cre]

Maintainer: Anestis Gkanogiannis <anestis at>

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biocViews Classification, Clustering, Microbiome, Sequencing, Software
Version 1.2.0
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License GPL-3
Depends R (>= 4.2)
Imports methods, rJava
Suggests BiocStyle, cvms, data.table, dplyr, ggplot2, gridExtra, knitr, R.utils, rmarkdown, sabre, spelling, testthat (>= 3.0.0)
SystemRequirements Java (>= 8)
Depends On Me
Imports Me
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