m6Aboost

DOI: 10.18129/B9.bioc.m6Aboost  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see m6Aboost.

m6Aboost

Bioconductor version: 3.17

This package can help user to run the m6Aboost model on their own miCLIP2 data. The package includes functions to assign the read counts and get the features to run the m6Aboost model. The miCLIP2 data should be stored in a GRanges object. More details can be found in the vignette.

Author: You Zhou [aut, cre] , Kathi Zarnack [aut]

Maintainer: You Zhou <youzhoulearning at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("m6Aboost")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("m6Aboost")

 

HTML	R Script	m6Aboost Vignettes
PDF		Reference Manual
Text		NEWS

Details

biocViews	Epigenetics, ExperimentHubSoftware, Genetics, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 3.14 (R-4.1) (2 years)
License	Artistic-2.0
Depends	S4Vectors, adabag, GenomicRanges, R (>= 4.1)
Imports	dplyr, rtracklayer, BSgenome, Biostrings, utils, methods, IRanges, ExperimentHub
LinkingTo
Suggests	knitr, rmarkdown, bookdown, testthat, BiocStyle, BSgenome.Mmusculus.UCSC.mm10
SystemRequirements
Enhances
URL	https://github.com/ZarnackGroup/m6Aboost
BugReports	https://github.com/ZarnackGroup/m6Aboost/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	m6Aboost_1.6.0.tar.gz
Windows Binary	m6Aboost_1.6.0.zip
macOS Binary (x86_64)	m6Aboost_1.6.0.tgz
macOS Binary (arm64)	m6Aboost_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/m6Aboost
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/m6Aboost
Bioc Package Browser	https://code.bioconductor.org/browse/m6Aboost/
Package Short Url	https://bioconductor.org/packages/m6Aboost/
Package Downloads Report	Download Stats