DOI: 10.18129/B9.bioc.iCOBRA  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see iCOBRA.

Comparison and Visualization of Ranking and Assignment Methods

Bioconductor version: 3.17

This package provides functions for calculation and visualization of performance metrics for evaluation of ranking and binary classification (assignment) methods. Various types of performance plots can be generated programmatically. The package also contains a shiny application for interactive exploration of results.

Author: Charlotte Soneson [aut, cre]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("iCOBRA")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


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HTML R Script iCOBRA User Guide
PDF   Reference Manual
Text   NEWS


biocViews Classification, Software, Visualization
Version 1.28.1
In Bioconductor since BioC 3.3 (R-3.3) (7.5 years)
License GPL (>=2)
Depends R (>= 4.0)
Imports shiny (>=, shinydashboard, shinyBS, reshape2, ggplot2 (>= 2.0.0), scales, ROCR, dplyr, DT, limma, methods, UpSetR, markdown, utils
Suggests knitr, rmarkdown, testthat
URL https://github.com/csoneson/iCOBRA
BugReports https://github.com/csoneson/iCOBRA/issues
Depends On Me
Imports Me
Suggests Me muscat, SummarizedBenchmark
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package iCOBRA_1.28.1.tar.gz
Windows Binary iCOBRA_1.28.1.zip
macOS Binary (x86_64) iCOBRA_1.28.1.tgz
macOS Binary (arm64) iCOBRA_1.28.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/iCOBRA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/iCOBRA
Bioc Package Browser https://code.bioconductor.org/browse/iCOBRA/
Package Short Url https://bioconductor.org/packages/iCOBRA/
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