iASeq

DOI: 10.18129/B9.bioc.iASeq  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see iASeq.

iASeq: integrating multiple sequencing datasets for detecting allele-specific events

Bioconductor version: 3.17

It fits correlation motif model to multiple RNAseq or ChIPseq studies to improve detection of allele-specific events and describe correlation patterns across studies.

Author: Yingying Wei, Hongkai Ji

Maintainer: Yingying Wei <ywei at jhsph.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("iASeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iASeq")

 

PDF	R Script	iASeq Vignette
PDF		Reference Manual

Details

biocViews	ChIPSeq, ImmunoOncology, RNASeq, SNP, Software
Version	1.44.0
In Bioconductor since	BioC 2.10 (R-2.15) (11.5 years)
License	GPL-2
Depends	R (>= 2.14.1)
Imports	graphics, grDevices
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iASeq_1.44.0.tar.gz
Windows Binary	iASeq_1.44.0.zip
macOS Binary (x86_64)	iASeq_1.44.0.tgz
macOS Binary (arm64)	iASeq_1.44.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iASeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iASeq
Bioc Package Browser	https://code.bioconductor.org/browse/iASeq/
Package Short Url	https://bioconductor.org/packages/iASeq/
Package Downloads Report	Download Stats