flagme

DOI: 10.18129/B9.bioc.flagme  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see flagme.

Analysis of Metabolomics GC/MS Data

Bioconductor version: 3.17

Fragment-level analysis of gas chromatography-massspectrometry metabolomics data.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")

 

PDF	R Script	\texttt{flagme}: Fragment-level analysis of \\ GC-MS-based metabolomics data
PDF	R Script	Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, MassSpectrometry, Software
Version	1.56.0
In Bioconductor since	BioC 2.4 (R-2.9) (14.5 years)
License	LGPL (>= 2)
Depends	gcspikelite, xcms, CAMERA
Imports	gplots, graphics, MASS, methods, SparseM, stats, utils
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flagme_1.56.0.tar.gz
Windows Binary	flagme_1.56.0.zip (64-bit only)
macOS Binary (x86_64)	flagme_1.56.0.tgz
macOS Binary (arm64)	flagme_1.56.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flagme
Bioc Package Browser	https://code.bioconductor.org/browse/flagme/
Package Short Url	https://bioconductor.org/packages/flagme/
Package Downloads Report	Download Stats