dupRadar

DOI: 10.18129/B9.bioc.dupRadar  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see dupRadar.

Assessment of duplication rates in RNA-Seq datasets

Bioconductor version: 3.17

Duplication rate quality control for RNA-Seq datasets.

Author: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Maintainer: Sergi Sayols <sergisayolspuig at gmail.com>, Holger Klein <holger.klein at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dupRadar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dupRadar")

 

HTML	R Script	Using dupRadar
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, QualityControl, RNASeq, Sequencing, Software, Technology
Version	1.30.3
In Bioconductor since	BioC 3.2 (R-3.2) (8 years)
License	GPL-3
Depends	R (>= 3.2.0)
Imports	Rsubread(>= 1.14.1), KernSmooth
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, AnnotationHub
SystemRequirements
Enhances
URL	https://www.bioconductor.org/packages/dupRadar https://ssayols.github.io/dupRadar/index.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dupRadar_1.30.3.tar.gz
Windows Binary
macOS Binary (x86_64)	dupRadar_1.30.3.tgz
macOS Binary (arm64)	dupRadar_1.30.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dupRadar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dupRadar
Bioc Package Browser	https://code.bioconductor.org/browse/dupRadar/
Package Short Url	https://bioconductor.org/packages/dupRadar/
Package Downloads Report	Download Stats