DOI: 10.18129/B9.bioc.demuxmix  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see demuxmix.

Demultiplexing oligo-barcoded scRNA-seq data using regression mixture models

Bioconductor version: 3.17

A package for demultiplexing single-cell sequencing experiments of pooled cells labeled with barcode oligonucleotides. The package implements methods to fit regression mixture models for a probabilistic classification of cells, including multiplet detection. Demultiplexing error rates can be estimated, and methods for quality control are provided.

Author: Hans-Ulrich Klein [aut, cre]

Maintainer: Hans-Ulrich Klein <hansulrich.klein at>

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biocViews Classification, Preprocessing, Regression, Sequencing, SingleCell, Software
Version 1.2.0
In Bioconductor since BioC 3.16 (R-4.2) (1 year)
License Artistic-2.0
Depends R (>= 4.0.0)
Imports stats, MASS, Matrix, ggplot2, gridExtra, methods
Suggests BiocStyle, cowplot, DropletUtils, knitr, reshape2, rmarkdown, testthat (>= 3.0.0)
Depends On Me
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