crisprViz

DOI: 10.18129/B9.bioc.crisprViz  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see crisprViz.

Visualization Functions for CRISPR gRNAs

Bioconductor version: 3.17

Provides functionalities to visualize and contextualize CRISPR guide RNAs (gRNAs) on genomic tracks across nucleases and applications. Works in conjunction with the crisprBase and crisprDesign Bioconductor packages. Plots are produced using the Gviz framework.

Author: Jean-Philippe Fortin [aut, cre], Luke Hoberecht [aut]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("crisprViz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprViz")

 

HTML	R Script	Introduction to crisprViz
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	CRISPR, FunctionalGenomics, GeneTarget, Software
Version	1.2.0
In Bioconductor since	BioC 3.16 (R-4.2) (1 year)
License	MIT + file LICENSE
Depends	R (>= 4.2.0), crisprBase(>= 0.99.15), crisprDesign(>= 0.99.77)
Imports	BiocGenerics, Biostrings, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, grDevices, Gviz, IRanges, methods, S4Vectors
LinkingTo
Suggests	AnnotationHub, BiocStyle, BSgenome.Hsapiens.UCSC.hg38, knitr, rmarkdown, rtracklayer, testthat, utils
SystemRequirements
Enhances
URL	https://github.com/crisprVerse/crisprViz
BugReports	https://github.com/crisprVerse/crisprViz/issues
Depends On Me
Imports Me	crisprVerse
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	crisprViz_1.2.0.tar.gz
Windows Binary	crisprViz_1.2.0.zip
macOS Binary (x86_64)	crisprViz_1.2.0.tgz
macOS Binary (arm64)	crisprViz_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/crisprViz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/crisprViz
Bioc Package Browser	https://code.bioconductor.org/browse/crisprViz/
Package Short Url	https://bioconductor.org/packages/crisprViz/
Package Downloads Report	Download Stats