copa

DOI: 10.18129/B9.bioc.copa  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see copa.

Functions to perform cancer outlier profile analysis.

Bioconductor version: 3.17

COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.

Author: James W. MacDonald

Maintainer: James W. MacDonald <jmacdon at u.washington.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("copa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("copa")

 

PDF	R Script	copa Overview
PDF		Reference Manual

Details

biocViews	DifferentialExpression, OneChannel, Software, TwoChannel, Visualization
Version	1.68.0
In Bioconductor since	BioC 1.8 (R-2.3) (17.5 years)
License	Artistic-2.0
Depends	Biobase, methods
Imports
LinkingTo
Suggests	colonCA
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	copa_1.68.0.tar.gz
Windows Binary	copa_1.68.0.zip
macOS Binary (x86_64)	copa_1.68.0.tgz
macOS Binary (arm64)	copa_1.68.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/copa
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/copa
Bioc Package Browser	https://code.bioconductor.org/browse/copa/
Package Short Url	https://bioconductor.org/packages/copa/
Package Downloads Report	Download Stats