DOI: 10.18129/B9.bioc.conumee  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see conumee.

Enhanced copy-number variation analysis using Illumina DNA methylation arrays

Bioconductor version: 3.17

This package contains a set of processing and plotting methods for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC methylation arrays.

Author: Volker Hovestadt, Marc Zapatka

Maintainer: Volker Hovestadt <conumee at>

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biocViews CopyNumberVariation, DNAMethylation, MethylationArray, Microarray, Normalization, Preprocessing, QualityControl, Software
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License GPL (>= 2)
Depends R (>= 3.5.0), minfi, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest
Imports methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges, GenomeInfoDb
Suggests BiocStyle, knitr, rmarkdown, minfiData, RCurl
Depends On Me
Imports Me
Suggests Me CopyNeutralIMA
Links To Me
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