compEpiTools

DOI: 10.18129/B9.bioc.compEpiTools  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see compEpiTools.

Tools for computational epigenomics

Bioconductor version: 3.17

Tools for computational epigenomics developed for the analysis, integration and simultaneous visualization of various (epi)genomics data types across multiple genomic regions in multiple samples.

Author: Mattia Pelizzola [aut], Kamal Kishore [aut], Mattia Furlan [ctb, cre]

Maintainer: Mattia Furlan <mattia.furlan at iit.it>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("compEpiTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("compEpiTools")

 

PDF	R Script	compEpiTools.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Coverage, GeneExpression, GenomeAnnotation, Sequencing, Software, Visualization
Version	1.34.1
In Bioconductor since	BioC 3.0 (R-3.1) (9 years)
License	GPL
Depends	R (>= 3.5.0), methods, topGO, GenomicRanges
Imports	AnnotationDbi, BiocGenerics, Biostrings, Rsamtools, parallel, grDevices, gplots, IRanges, GenomicFeatures, XVector, methylPipe, GO.db, S4Vectors, GenomeInfoDb
LinkingTo
Suggests	BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene, org.Mm.eg.db, knitr, rtracklayer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	compEpiTools_1.34.1.tar.gz
Windows Binary	compEpiTools_1.34.1.zip
macOS Binary (x86_64)	compEpiTools_1.34.1.tgz
macOS Binary (arm64)	compEpiTools_1.34.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/compEpiTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/compEpiTools
Bioc Package Browser	https://code.bioconductor.org/browse/compEpiTools/
Package Short Url	https://bioconductor.org/packages/compEpiTools/
Package Downloads Report	Download Stats