cleaver

DOI: 10.18129/B9.bioc.cleaver  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see cleaver.

Cleavage of Polypeptide Sequences

Bioconductor version: 3.17

In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html

Author: Sebastian Gibb [aut, cre]

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("cleaver")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cleaver")

 

HTML	R Script	In-silico cleavage of polypeptides
PDF		Reference Manual
Text		NEWS

Details

biocViews	Proteomics, Software
Version	1.38.0
In Bioconductor since	BioC 2.13 (R-3.0) (10 years)
License	GPL (>= 3)
Depends	R (>= 3.0.0), methods, Biostrings(>= 1.29.8)
Imports	S4Vectors, IRanges
LinkingTo
Suggests	testthat (>= 0.8), knitr, BiocStyle(>= 0.0.14), rmarkdown, BRAIN, UniProt.ws(>= 2.36.5)
SystemRequirements
Enhances
URL	https://github.com/sgibb/cleaver/
BugReports	https://github.com/sgibb/cleaver/issues/
Depends On Me
Imports Me	ProteoDisco, synapter
Suggests Me	RforProteomics
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cleaver_1.38.0.tar.gz
Windows Binary	cleaver_1.38.0.zip
macOS Binary (x86_64)	cleaver_1.38.0.tgz
macOS Binary (arm64)	cleaver_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cleaver
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cleaver
Bioc Package Browser	https://code.bioconductor.org/browse/cleaver/
Package Short Url	https://bioconductor.org/packages/cleaver/
Package Downloads Report	Download Stats