DOI: 10.18129/B9.bioc.censcyt  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see censcyt.

Differential abundance analysis with a right censored covariate in high-dimensional cytometry

Bioconductor version: 3.17

Methods for differential abundance analysis in high-dimensional cytometry data when a covariate is subject to right censoring (e.g. survival time) based on multiple imputation and generalized linear mixed models.

Author: Reto Gerber [aut, cre]

Maintainer: Reto Gerber <gerberreto at pm.me>

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biocViews CellBasedAssays, CellBiology, Clustering, FeatureExtraction, FlowCytometry, ImmunoOncology, Proteomics, SingleCell, Software, Survival
Version 1.8.0
In Bioconductor since BioC 3.13 (R-4.1) (2.5 years)
License MIT + file LICENSE
Depends R (>= 4.0), diffcyt
Imports BiocParallel, broom.mixed, dirmult, dplyr, edgeR, fitdistrplus, lme4, magrittr, MASS, methods, mice, multcomp, purrr, rlang, S4Vectors, stats, stringr, SummarizedExperiment, survival, tibble, tidyr, utils
Suggests BiocStyle, knitr, rmarkdown, testthat, ggplot2
URL https://github.com/retogerber/censcyt
BugReports https://github.com/retogerber/censcyt/issues
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Source Package censcyt_1.8.0.tar.gz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/censcyt
Bioc Package Browser https://code.bioconductor.org/browse/censcyt/
Package Short Url https://bioconductor.org/packages/censcyt/
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