DOI: 10.18129/B9.bioc.canceR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see canceR.

A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Bioconductor version: 3.17

The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Author: Karim Mezhoud. Nuclear Safety & Security Department. Nuclear Science Center of Tunisia.

Maintainer: Karim Mezhoud <kmezhoud at>

Citation (from within R, enter citation("canceR")):


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biocViews Clustering, GO, GUI, GeneExpression, GeneSetEnrichment, KEGG, MultipleComparison, Software
Version 1.34.0
In Bioconductor since BioC 3.1 (R-3.2) (8.5 years)
License GPL-2
Depends R (>= 4.1), tcltk
Imports GSEABase, tkrplot, geNetClassifier, RUnit, Formula, rpart, survival, Biobase, phenoTest, circlize, plyr, graphics, stats, utils, grDevices, R.oo, R.methodsS3, httr
Suggests testthat (>= 3.1), knitr, rmarkdown, BiocStyle
SystemRequirements Tktable, BWidget
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