biodbUniprot

DOI: 10.18129/B9.bioc.biodbUniprot  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see biodbUniprot.

biodbUniprot, a library for connecting to the Uniprot Database

Bioconductor version: 3.17

The biodbUniprot library is an extension of the biodb framework package. It provides access to the UniProt database. It allows to retrieve entries by their accession number, and run web service queries for searching for entries.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbUniprot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbUniprot")

 

HTML	R Script	Introduction to the biodbUniprot package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.6.0
In Bioconductor since	BioC 3.14 (R-4.1) (2 years)
License	AGPL-3
Depends	R (>= 4.1.0)
Imports	R6, biodb(>= 1.4.2)
LinkingTo
Suggests	BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr, covr
SystemRequirements
Enhances
URL	https://github.com/pkrog/biodbUniprot
BugReports	https://github.com/pkrog/biodbUniprot/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biodbUniprot_1.6.0.tar.gz
Windows Binary	biodbUniprot_1.6.0.zip
macOS Binary (x86_64)	biodbUniprot_1.6.0.tgz
macOS Binary (arm64)	biodbUniprot_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biodbUniprot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biodbUniprot
Bioc Package Browser	https://code.bioconductor.org/browse/biodbUniprot/
Package Short Url	https://bioconductor.org/packages/biodbUniprot/
Package Downloads Report	Download Stats