biodbNcbi

DOI: 10.18129/B9.bioc.biodbNcbi  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see biodbNcbi.

biodbNcbi, a library for connecting to NCBI Databases.

Bioconductor version: 3.17

The biodbNcbi library provides access to the NCBI databases CCDS, Gene, Pubchem Comp and Pubchem Subst, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name or mass.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbNcbi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbNcbi")

 

HTML	R Script	Introduction to the biodbNcbi package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.4.0
In Bioconductor since	BioC 3.15 (R-4.2) (1.5 years)
License	AGPL-3
Depends	R (>= 4.1)
Imports	biodb(>= 1.3.2), R6, XML, chk
LinkingTo
Suggests	roxygen2, BiocStyle, testthat (>= 2.0.0), devtools, knitr, rmarkdown, covr, lgr
SystemRequirements
Enhances
URL	https://github.com/pkrog/biodbNcbi
BugReports	https://github.com/pkrog/biodbNCbi/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biodbNcbi_1.4.0.tar.gz
Windows Binary	biodbNcbi_1.4.0.zip
macOS Binary (x86_64)	biodbNcbi_1.4.0.tgz
macOS Binary (arm64)	biodbNcbi_1.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biodbNcbi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biodbNcbi
Bioc Package Browser	https://code.bioconductor.org/browse/biodbNcbi/
Package Short Url	https://bioconductor.org/packages/biodbNcbi/
Package Downloads Report	Download Stats