biodbChebi

DOI: 10.18129/B9.bioc.biodbChebi  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see biodbChebi.

biodbChebi, a library for connecting to the ChEBI Database

Bioconductor version: 3.17

The biodbChebi library provides access to the ChEBI Database, using biodb package framework. It allows to retrieve entries by their accession number. Web services can be accessed for searching the database by name, mass or other fields.

Author: Pierrick Roger [aut, cre]

Maintainer: Pierrick Roger <pierrick.roger at cea.fr>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("biodbChebi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("biodbChebi")

 

HTML	R Script	Introduction to the biodbChebi package.
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Infrastructure, Software
Version	1.6.0
In Bioconductor since	BioC 3.14 (R-4.1) (2 years)
License	AGPL-3
Depends	R (>= 4.1)
Imports	R6, biodb(>= 1.1.5)
LinkingTo
Suggests	BiocStyle, roxygen2, devtools, testthat (>= 2.0.0), knitr, rmarkdown, lgr
SystemRequirements
Enhances
URL	https://github.com/pkrog/biodbChebi
BugReports	https://github.com/pkrog/biodbChebi/issues
Depends On Me
Imports Me	phenomis
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	biodbChebi_1.6.0.tar.gz
Windows Binary	biodbChebi_1.6.0.zip
macOS Binary (x86_64)	biodbChebi_1.6.0.tgz
macOS Binary (arm64)	biodbChebi_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/biodbChebi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/biodbChebi
Bioc Package Browser	https://code.bioconductor.org/browse/biodbChebi/
Package Short Url	https://bioconductor.org/packages/biodbChebi/
Package Downloads Report	Download Stats