alevinQC

DOI: 10.18129/B9.bioc.alevinQC  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see alevinQC.

Generate QC Reports For Alevin Output

Bioconductor version: 3.17

Generate QC reports summarizing the output from an alevin run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut], Rob Patro [aut], Dongze He [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alevinQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alevinQC")

 

HTML	R Script	alevinQC
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	QualityControl, SingleCell, Software
Version	1.16.1
In Bioconductor since	BioC 3.9 (R-3.6) (4.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.0)
Imports	rmarkdown (>= 2.5), tools, methods, ggplot2, GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.17.4), cowplot, rlang, Rcpp
LinkingTo	Rcpp
Suggests	knitr, BiocStyle, testthat (>= 3.0.0), BiocManager
SystemRequirements	C++11
Enhances
URL	https://github.com/csoneson/alevinQC
BugReports	https://github.com/csoneson/alevinQC/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	alevinQC_1.16.1.tar.gz
Windows Binary	alevinQC_1.16.1.zip (64-bit only)
macOS Binary (x86_64)	alevinQC_1.16.1.tgz
macOS Binary (arm64)	alevinQC_1.16.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/alevinQC
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/alevinQC
Bioc Package Browser	https://code.bioconductor.org/browse/alevinQC/
Package Short Url	https://bioconductor.org/packages/alevinQC/
Package Downloads Report	Download Stats