alabaster.spatial

DOI: 10.18129/B9.bioc.alabaster.spatial  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see alabaster.spatial.

Save and Load Spatial 'Omics Data to/from File

Bioconductor version: 3.17

Save SpatialExperiment objects and their images into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.

Author: Aaron Lun [aut, cre]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("alabaster.spatial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alabaster.spatial")

 

HTML	R Script	Spatial data in DataSetDB
PDF		Reference Manual
Text		LICENSE

Details

biocViews	DataImport, DataRepresentation, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends	SpatialExperiment, alabaster.base
Imports	methods, utils, grDevices, S4Vectors, SummarizedExperiment, jsonlite, alabaster.sce
LinkingTo
Suggests	testthat, knitr, rmarkdown, BiocStyle, magick, png, digest
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	alabaster
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	alabaster.spatial_1.0.0.tar.gz
Windows Binary	alabaster.spatial_1.0.0.zip
macOS Binary (x86_64)	alabaster.spatial_1.0.0.tgz
macOS Binary (arm64)	alabaster.spatial_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/alabaster.spatial
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/alabaster.spatial
Bioc Package Browser	https://code.bioconductor.org/browse/alabaster.spatial/
Package Short Url	https://bioconductor.org/packages/alabaster.spatial/
Package Downloads Report	Download Stats