UNDO

DOI: 10.18129/B9.bioc.UNDO  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see UNDO.

Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions

Bioconductor version: 3.17

UNDO is an R package for unsupervised deconvolution of tumor and stromal mixed expression data. It detects marker genes and deconvolutes the mixing expression data without any prior knowledge.

Author: Niya Wang <wangny at vt.edu>

Maintainer: Niya Wang <wangny at vt.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("UNDO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("UNDO")

 

PDF	R Script	UNDO Usage
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software
Version	1.42.0
In Bioconductor since	BioC 2.14 (R-3.1) (9.5 years)
License	GPL-2
Depends	R (>= 2.15.2), methods, BiocGenerics, Biobase
Imports	MASS, boot, nnls, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	UNDO_1.42.0.tar.gz
Windows Binary	UNDO_1.42.0.zip
macOS Binary (x86_64)	UNDO_1.42.0.tgz
macOS Binary (arm64)	UNDO_1.42.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/UNDO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/UNDO
Bioc Package Browser	https://code.bioconductor.org/browse/UNDO/
Package Short Url	https://bioconductor.org/packages/UNDO/
Package Downloads Report	Download Stats