ToxicoGx

DOI: 10.18129/B9.bioc.ToxicoGx  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see ToxicoGx.

Analysis of Large-Scale Toxico-Genomic Data

Bioconductor version: 3.17

Contains a set of functions to perform large-scale analysis of toxicogenomic data, providing a standardized data structure to hold information relevant to annotation, visualization and statistical analysis of toxicogenomic data.

Author: Sisira Nair [aut], Esther Yoo [aut], Christopher Eeles [aut], Amy Tang [aut], Nehme El-Hachem [aut], Petr Smirnov [aut], Jermiah Joseph [aut], Benjamin Haibe-Kains [aut, cre]

Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains at utoronto.ca>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ToxicoGx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ToxicoGx")

 

HTML	R Script	ToxicoGx: An R Platform for Integrated Toxicogenomics Data Analysis
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Version	2.4.0
In Bioconductor since	BioC 3.12 (R-4.0) (3 years)
License	MIT + file LICENSE
Depends	R (>= 4.1), CoreGx
Imports	SummarizedExperiment, BiocGenerics, S4Vectors, Biobase, BiocParallel, ggplot2, tibble, dplyr, caTools, downloader, magrittr, methods, reshape2, tidyr, data.table, assertthat, scales, graphics, grDevices, parallel, stats, utils, limma, jsonlite
LinkingTo
Suggests	rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools, PharmacoGx, xtable, markdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ToxicoGx_2.4.0.tar.gz
Windows Binary	ToxicoGx_2.4.0.zip
macOS Binary (x86_64)	ToxicoGx_2.4.0.tgz
macOS Binary (arm64)	ToxicoGx_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ToxicoGx
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ToxicoGx
Bioc Package Browser	https://code.bioconductor.org/browse/ToxicoGx/
Package Short Url	https://bioconductor.org/packages/ToxicoGx/
Package Downloads Report	Download Stats