TRESS

DOI: 10.18129/B9.bioc.TRESS  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see TRESS.

Toolbox for mRNA epigenetics sequencing analysis

Bioconductor version: 3.17

This package is devoted to analyzing MeRIP-seq data. Current functionalities include 1. detect transcriptome wide m6A methylation regions 2. detect transcriptome wide differential m6A methylation regions.

Author: Zhenxing Guo [aut, cre], Hao Wu [ctb]

Maintainer: Zhenxing Guo <zhenxing.guo at emory.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TRESS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TRESS")

 

HTML	R Script	The TRESS User's Guide
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DifferentialMethylation, Epigenetics, PeakDetection, RNASeq, Software
Version	1.6.0
In Bioconductor since	BioC 3.14 (R-4.1) (2 years)
License	GPL-3 + file LICENSE
Depends	R (>= 4.1.0), parallel, S4Vectors
Imports	utils, rtracklayer, Matrix, matrixStats, stats, methods, graphics, GenomicRanges, GenomicFeatures, IRanges, Rsamtools, AnnotationDbi
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	magpie
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TRESS_1.6.0.tar.gz
Windows Binary
macOS Binary (x86_64)	TRESS_1.6.0.tgz
macOS Binary (arm64)	TRESS_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TRESS
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TRESS
Bioc Package Browser	https://code.bioconductor.org/browse/TRESS/
Package Short Url	https://bioconductor.org/packages/TRESS/
Package Downloads Report	Download Stats