SEtools

DOI: 10.18129/B9.bioc.SEtools  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see SEtools.

SEtools: tools for working with SummarizedExperiment

Bioconductor version: 3.17

This includes a set of convenience functions for working with the SummarizedExperiment class. Note that plotting functions historically in this package have been moved to the sechm package (see vignette for details).

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")

 

HTML	R Script	SEtools
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Software
Version	1.14.0
In Bioconductor since	BioC 3.10 (R-3.6) (4 years)
License	GPL
Depends	R (>= 4.0), SummarizedExperiment, sechm
Imports	BiocParallel, Matrix, DESeq2, S4Vectors, data.table, edgeR, openxlsx, pheatmap, stats, circlize, methods, sva
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, ggplot2
SystemRequirements
Enhances
URL
BugReports	https://github.com/plger/SEtools
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	SEtools_1.14.0.tar.gz
Windows Binary	SEtools_1.14.0.zip (64-bit only)
macOS Binary (x86_64)	SEtools_1.14.0.tgz
macOS Binary (arm64)	SEtools_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/SEtools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/SEtools
Bioc Package Browser	https://code.bioconductor.org/browse/SEtools/
Package Short Url	https://bioconductor.org/packages/SEtools/
Package Downloads Report	Download Stats