DOI: 10.18129/B9.bioc.RiboCrypt  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RiboCrypt.

Interactive visualization in genomics

Bioconductor version: 3.17

R Package for interactive visualization and browsing NGS data. It contains a browser for both transcript and genomic coordinate view. In addition a QC and general metaplots are included, among others differential translation plots and gene expression plots. The package is still under development.

Author: Michal Swirski [aut, cre, cph], Haakon Tjeldnes [aut, ctb], Kornel Labun [ctb]

Maintainer: Michal Swirski <michal.swirski at uw.edu.pl>

Citation (from within R, enter citation("RiboCrypt")):


To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script RiboCrypt_app_tutorial.html
HTML R Script RiboCrypt_overview.html
PDF   Reference Manual


biocViews RNASeq, RiboSeq, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 3.14 (R-4.1) (2 years)
License MIT + file LICENSE
Depends R (>= 3.6.0), ORFik(>= 1.13.12)
Imports bslib, BiocGenerics, BiocParallel, Biostrings, data.table, dplyr, GenomeInfoDb, GenomicFeatures, GenomicRanges, ggplot2, htmlwidgets, httr, IRanges, jsonlite, knitr, markdown, NGLVieweR, plotly, rlang, RCurl, shiny, shinycssloaders, shinyhelper, shinyjqui, stringr
Suggests testthat, rmarkdown, BiocStyle, BSgenome, BSgenome.Hsapiens.UCSC.hg19
URL https://github.com/m-swirski/RiboCrypt
BugReports https://github.com/m-swirski/RiboCrypt/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RiboCrypt_1.6.0.tar.gz
Windows Binary RiboCrypt_1.6.0.zip (64-bit only)
macOS Binary (x86_64) RiboCrypt_1.6.0.tgz
macOS Binary (arm64) RiboCrypt_1.6.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RiboCrypt
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RiboCrypt
Bioc Package Browser https://code.bioconductor.org/browse/RiboCrypt/
Package Short Url https://bioconductor.org/packages/RiboCrypt/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: