DOI: 10.18129/B9.bioc.Rbec  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Rbec.

Rbec: a tool for analysis of amplicon sequencing data from synthetic microbial communities

Bioconductor version: 3.17

Rbec is a adapted version of DADA2 for analyzing amplicon sequencing data from synthetic communities (SynComs), where the reference sequences for each strain exists. Rbec can not only accurately profile the microbial compositions in SynComs, but also predict the contaminants in SynCom samples.

Author: Pengfan Zhang [aut, cre]

Maintainer: Pengfan Zhang <pzhang at mpipz.mpg.de>

Citation (from within R, enter citation("Rbec")):


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biocViews MicrobialStrain, Microbiome, Sequencing, Software
Version 1.8.0
In Bioconductor since BioC 3.13 (R-4.1) (2.5 years)
License LGPL-3
Imports Rcpp (>= 1.0.6), dada2, ggplot2, readr, doParallel, foreach, grDevices, stats, utils
LinkingTo Rcpp
Suggests knitr, rmarkdown
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package Rbec_1.8.0.tar.gz
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