Rarr

DOI: 10.18129/B9.bioc.Rarr  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see Rarr.

Read Zarr Files in R

Bioconductor version: 3.17

The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. It's design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specifcation in R with minimal reliance on an external tools or libraries.

Author: Mike Smith [aut, cre]

Maintainer: Mike Smith <grimbough at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rarr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rarr")

 

HTML	R Script	Working with Zarr arrays in R
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	DataImport, Software
Version	1.0.3
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends
Imports	jsonlite, httr, stringr, R.utils, utils, paws.storage, methods
LinkingTo
Suggests	BiocStyle, covr, knitr, tinytest
SystemRequirements	GNU make
Enhances
URL	https://github.com/grimbough/Rarr
BugReports	https://github.com/grimbough/Rarr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rarr_1.0.3.tar.gz
Windows Binary	Rarr_1.0.3.zip
macOS Binary (x86_64)	Rarr_1.0.3.tgz
macOS Binary (arm64)	Rarr_1.0.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rarr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rarr
Bioc Package Browser	https://code.bioconductor.org/browse/Rarr/
Package Short Url	https://bioconductor.org/packages/Rarr/
Package Downloads Report	Download Stats