RNAmodR.AlkAnilineSeq

DOI: 10.18129/B9.bioc.RNAmodR.AlkAnilineSeq  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see RNAmodR.AlkAnilineSeq.

Detection of m7G, m3C and D modification by AlkAnilineSeq

Bioconductor version: 3.17

RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb, fnd]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("RNAmodR.AlkAnilineSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.AlkAnilineSeq")

 

HTML	R Script	RNAmodR.AlkAnilineSeq
PDF		Reference Manual
Text		NEWS

Details

biocViews	Sequencing, Software, Visualization, WorkflowStep
Version	1.14.0
In Bioconductor since	BioC 3.10 (R-3.6) (4 years)
License	Artistic-2.0
Depends	R (>= 4.0), RNAmodR(>= 1.5.3)
Imports	methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, RNAmodR.Data
SystemRequirements
Enhances
URL	https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq
BugReports	https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues
Depends On Me
Imports Me
Suggests Me	RNAmodR.ML
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RNAmodR.AlkAnilineSeq_1.14.0.tar.gz
Windows Binary	RNAmodR.AlkAnilineSeq_1.14.0.zip
macOS Binary (x86_64)	RNAmodR.AlkAnilineSeq_1.14.0.tgz
macOS Binary (arm64)	RNAmodR.AlkAnilineSeq_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RNAmodR.AlkAnilineSeq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RNAmodR.AlkAnilineSeq
Bioc Package Browser	https://code.bioconductor.org/browse/RNAmodR.AlkAnilineSeq/
Package Short Url	https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq/
Package Downloads Report	Download Stats