R4RNA

DOI: 10.18129/B9.bioc.R4RNA  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see R4RNA.

An R package for RNA visualization and analysis

Bioconductor version: 3.17

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence and structure. Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and covariation, with numerical methods for computing statistics for each.

Author: Daniel Lai, Irmtraud Meyer <irmtraud.meyer at cantab.net>

Maintainer: Daniel Lai <jujubix at cs.ubc.ca>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("R4RNA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("R4RNA")

 

PDF	R Script	R4RNA.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, DataImport, DataRepresentation, MultipleComparison, MultipleSequenceAlignment, Preprocessing, Software, Visualization
Version	1.28.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	GPL-3
Depends	R (>= 3.2.0), Biostrings(>= 2.38.0)
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL	http://www.e-rna.org/r-chie/
Depends On Me
Imports Me	ggmsa
Suggests Me	rfaRm
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	R4RNA_1.28.0.tar.gz
Windows Binary	R4RNA_1.28.0.zip (64-bit only)
macOS Binary (x86_64)	R4RNA_1.28.0.tgz
macOS Binary (arm64)	R4RNA_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/R4RNA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/R4RNA
Bioc Package Browser	https://code.bioconductor.org/browse/R4RNA/
Package Short Url	https://bioconductor.org/packages/R4RNA/
Package Downloads Report	Download Stats