OncoScore

DOI: 10.18129/B9.bioc.OncoScore  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see OncoScore.

A tool to identify potentially oncogenic genes

Bioconductor version: 3.17

OncoScore is a tool to measure the association of genes to cancer based on citation frequencies in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.

Author: Luca De Sano [cre, aut] , Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb], Daniele Ramazzotti [aut] , Roberta Spinelli [ctb]

Maintainer: Luca De Sano <luca.desano at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("OncoScore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OncoScore")

 

HTML	R Script	Introduction
HTML	R Script	Running OncoScore
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	BiomedicalInformatics, Software
Version	1.28.0
In Bioconductor since	BioC 3.3 (R-3.3) (7.5 years)
License	file LICENSE
Depends	R (>= 4.1.0)
Imports	biomaRt, grDevices, graphics, utils, methods
LinkingTo
Suggests	BiocGenerics, BiocStyle, knitr, testthat
SystemRequirements
Enhances
URL	https://github.com/danro9685/OncoScore
BugReports	https://github.com/danro9685/OncoScore
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	OncoScore_1.28.0.tar.gz
Windows Binary	OncoScore_1.28.0.zip
macOS Binary (x86_64)	OncoScore_1.28.0.tgz
macOS Binary (arm64)	OncoScore_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/OncoScore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/OncoScore
Bioc Package Browser	https://code.bioconductor.org/browse/OncoScore/
Package Short Url	https://bioconductor.org/packages/OncoScore/
Package Downloads Report	Download Stats