MsDataHub

DOI: 10.18129/B9.bioc.MsDataHub  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MsDataHub.

Mass Spectrometry Data on ExperimentHub

Bioconductor version: 3.17

The MsDataHub package uses the ExperimentHub infrastructure to distribute raw mass spectrometry data files, peptide spectrum matches or quantitative data from proteomics and metabolomics experiments.

Author: Laurent Gatto [aut, cre] , Johannes Rainer [aut]

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsDataHub")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsDataHub")

 

HTML	R Script	Mass Spectrometry Data on ExperimentHub
PDF		Reference Manual
Text		NEWS

Details

biocViews	ExperimentHubSoftware, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends
Imports	ExperimentHub, utils
LinkingTo
Suggests	ExperimentHubData, DT, BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), Spectra, mzR, PSMatch, QFeatures
SystemRequirements
Enhances
URL	https://rformassspectrometry.github.io/MsDataHub
BugReports	https://github.com/RforMassSpectrometry/MsDataHub/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsDataHub_1.0.0.tar.gz
Windows Binary	MsDataHub_1.0.0.zip
macOS Binary (x86_64)	MsDataHub_1.0.0.tgz
macOS Binary (arm64)	MsDataHub_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MsDataHub
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsDataHub
Bioc Package Browser	https://code.bioconductor.org/browse/MsDataHub/
Package Short Url	https://bioconductor.org/packages/MsDataHub/
Package Downloads Report	Download Stats