MsBackendMgf

DOI: 10.18129/B9.bioc.MsBackendMgf  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MsBackendMgf.

Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files

Bioconductor version: 3.17

Mass spectrometry (MS) data backend supporting import and export of MS/MS spectra data from Mascot Generic Format (mgf) files. Objects defined in this package are supposed to be used with the Spectra Bioconductor package. This package thus adds mgf file support to the Spectra package.

Author: RforMassSpectrometry Package Maintainer [cre], Laurent Gatto [aut] , Johannes Rainer [aut] , Sebastian Gibb [aut] , Michael Witting [ctb]

Maintainer: RforMassSpectrometry Package Maintainer <maintainer at rformassspectrometry.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MsBackendMgf")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MsBackendMgf")

 

HTML	R Script	Description and usage of MsBackendMgf
PDF		Reference Manual

Details

biocViews	DataImport, Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software
Version	1.8.0
In Bioconductor since	BioC 3.13 (R-4.1) (2.5 years)
License	Artistic-2.0
Depends	R (>= 4.0), Spectra(>= 1.5.14)
Imports	BiocParallel, S4Vectors, IRanges, MsCoreUtils, methods, stats
LinkingTo
Suggests	testthat, knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown
SystemRequirements
Enhances
URL	https://github.com/RforMassSpectrometry/MsBackendMgf
BugReports	https://github.com/RforMassSpectrometry/MsBackendMgf/issues
Depends On Me
Imports Me
Suggests Me	CompoundDb, MsBackendRawFileReader, xcms
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MsBackendMgf_1.8.0.tar.gz
Windows Binary	MsBackendMgf_1.8.0.zip (64-bit only)
macOS Binary (x86_64)	MsBackendMgf_1.8.0.tgz
macOS Binary (arm64)	MsBackendMgf_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MsBackendMgf
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MsBackendMgf
Bioc Package Browser	https://code.bioconductor.org/browse/MsBackendMgf/
Package Short Url	https://bioconductor.org/packages/MsBackendMgf/
Package Downloads Report	Download Stats