DOI: 10.18129/B9.bioc.MethylSeekR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MethylSeekR.

Segmentation of Bis-seq data

Bioconductor version: 3.17

This is a package for the discovery of regulatory regions from Bis-seq data

Author: Lukas Burger, Dimos Gaidatzis, Dirk Schubeler and Michael Stadler

Maintainer: Lukas Burger <Lukas.Burger at>

Citation (from within R, enter citation("MethylSeekR")):


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PDF R Script MethylSeekR
PDF   Reference Manual


biocViews DNAMethylation, MethylSeq, Sequencing, Software
Version 1.40.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License GPL (>=2)
Depends rtracklayer(>= 1.16.3), parallel (>= 2.15.1), mhsmm (>= 0.4.4)
Imports IRanges(>= 1.16.3), BSgenome(>= 1.26.1), GenomicRanges(>= 1.10.5), geneplotter(>= 1.34.0), graphics (>= 2.15.2), grDevices (>= 2.15.2), parallel (>= 2.15.2), stats (>= 2.15.2), utils (>= 2.15.2)
Suggests BSgenome.Hsapiens.UCSC.hg18
Depends On Me
Imports Me
Suggests Me methylPipe, RnBeads
Links To Me
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