MassSpecWavelet

DOI: 10.18129/B9.bioc.MassSpecWavelet  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see MassSpecWavelet.

Peak Detection for Mass Spectrometry data using wavelet-based algorithms

Bioconductor version: 3.17

Peak Detection in Mass Spectrometry data is one of the important preprocessing steps. The performance of peak detection affects subsequent processes, including protein identification, profile alignment and biomarker identification. Using Continuous Wavelet Transform (CWT), this package provides a reliable algorithm for peak detection that does not require any type of smoothing or previous baseline correction method, providing more consistent results for different spectra. See

Author: Pan Du [aut], Warren Kibbe [aut], Simon Lin [aut], Sergio Oller Moreno [aut, cre]

Maintainer: Sergio Oller Moreno <sergioller at gmail.com>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MassSpecWavelet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MassSpecWavelet")

 

HTML	R Script	Finding local maxima
HTML	R Script	Using the MassSpecWavelet package
PDF		Reference Manual
Text		NEWS

Details

biocViews	ImmunoOncology, MassSpectrometry, PeakDetection, Proteomics, Software
Version	1.66.0
In Bioconductor since	BioC 2.0 (R-2.5) (16.5 years)
License	LGPL (>= 2)
Depends
Imports
LinkingTo
Suggests	signal, waveslim, BiocStyle, knitr, rmarkdown, RUnit, bench
SystemRequirements
Enhances
URL	https://github.com/zeehio/MassSpecWavelet
BugReports	http://github.com/zeehio/MassSpecWavelet/issues
Depends On Me
Imports Me	cosmiq, xcms
Suggests Me	downlit
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MassSpecWavelet_1.66.0.tar.gz
Windows Binary	MassSpecWavelet_1.66.0.zip
macOS Binary (x86_64)	MassSpecWavelet_1.66.0.tgz
macOS Binary (arm64)	MassSpecWavelet_1.66.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MassSpecWavelet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MassSpecWavelet
Bioc Package Browser	https://code.bioconductor.org/browse/MassSpecWavelet/
Package Short Url	https://bioconductor.org/packages/MassSpecWavelet/
Package Downloads Report	Download Stats