DOI: 10.18129/B9.bioc.M3C  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see M3C.

Monte Carlo Reference-based Consensus Clustering

Bioconductor version: 3.17

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")):


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PDF R Script M3C
PDF   Reference Manual
Text   NEWS


biocViews Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.22.0
In Bioconductor since BioC 3.6 (R-3.4) (6 years)
License AGPL-3
Depends R (>= 3.5.0)
Imports ggplot2, Matrix, doSNOW, cluster, parallel, foreach, doParallel, matrixcalc, Rtsne, corpcor, umap
Suggests knitr, rmarkdown
Depends On Me
Imports Me lilikoi
Suggests Me parameters
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package M3C_1.22.0.tar.gz
Windows Binary M3C_1.22.0.zip
macOS Binary (x86_64) M3C_1.22.0.tgz
macOS Binary (arm64) M3C_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/M3C
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/M3C
Bioc Package Browser https://code.bioconductor.org/browse/M3C/
Package Short Url https://bioconductor.org/packages/M3C/
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