DOI: 10.18129/B9.bioc.KinSwingR  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see KinSwingR.

KinSwingR: network-based kinase activity prediction

Bioconductor version: 3.17

KinSwingR integrates phosphosite data derived from mass-spectrometry data and kinase-substrate predictions to predict kinase activity. Several functions allow the user to build PWM models of kinase-subtrates, statistically infer PWM:substrate matches, and integrate these data to infer kinase activity.

Author: Ashley J. Waardenberg [aut, cre]

Maintainer: Ashley J. Waardenberg <a.waardenberg at>

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biocViews Network, Proteomics, SequenceMatching, Software
Version 1.18.0
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License GPL-3
Depends R (>= 3.5)
Imports data.table, BiocParallel, sqldf, stats, grid, grDevices
Suggests knitr, rmarkdown
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