DOI: 10.18129/B9.bioc.HumanTranscriptomeCompendium  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HumanTranscriptomeCompendium.

Tools to work with a Compendium of 181000 human transcriptome sequencing studies

Bioconductor version: 3.17

Provide tools for working with a compendium of human transcriptome sequences (originally htxcomp).

Author: Sean Davis, Vince Carey

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("HumanTranscriptomeCompendium")):


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if (!require("BiocManager", quietly = TRUE))


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HTML R Script HumanTranscriptomeCompendium -- a cloud-resident collection of sequenced human transcriptomes
PDF   Reference Manual


biocViews Infrastructure, Software, Transcriptomics
Version 1.16.3
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6)
Imports shiny, ssrch, S4Vectors, SummarizedExperiment, utils, BiocManager
Suggests knitr, BiocStyle, beeswarm, tximportData, DT, tximport, dplyr, magrittr, BiocFileCache, testthat, rhdf5client, rmarkdown
Depends On Me
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