DOI: 10.18129/B9.bioc.HTSFilter  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HTSFilter.

Filter replicated high-throughput transcriptome sequencing data

Bioconductor version: 3.17

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

Author: Andrea Rau [cre, aut] , Melina Gallopin [ctb], Gilles Celeux [ctb], Florence Jaffr├ęzic [ctb]

Maintainer: Andrea Rau <andrea.rau at>

Citation (from within R, enter citation("HTSFilter")):


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biocViews DifferentialExpression, GeneExpression, ImmunoOncology, Normalization, Preprocessing, RNASeq, Sequencing, Software
Version 1.40.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License Artistic-2.0
Depends R (>= 4.0.0)
Imports edgeR, DESeq2, BiocParallel, Biobase, utils, stats, grDevices, graphics, methods
Suggests EDASeq, testthat, knitr, rmarkdown, BiocStyle
Depends On Me
Imports Me coseq
Suggests Me HTSCluster
Links To Me
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