DOI: 10.18129/B9.bioc.HPAanalyze  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see HPAanalyze.

Retrieve and analyze data from the Human Protein Atlas

Bioconductor version: 3.17

Provide functions for retrieving, exploratory analyzing and visualizing the Human Protein Atlas data.

Author: Anh Nhat Tran [aut, cre]

Maintainer: Anh Nhat Tran <trannhatanh89 at gmail.com>

Citation (from within R, enter citation("HPAanalyze")):


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HTML R Script 1. Quick-start guide: Acquire and visualize the Human Protein Atlas (HPA) data in one function with HPAanalyze
HTML R Script 2. In-depth: Working with Human Protein Atlas (HPA) data in R with HPAanalyze
HTML R Script 3. Tutorial: Combine HPAanalyze with your Human Protein Atlas (HPA) queries
HTML R Script 4. Tutorial: Working with Human Protein Atlas (HPA) xml files offline
HTML R Script 5. Tutorial: Export Human Protein Atlas (HPA) data as JSON
HTML R Script 6. Tutorial: Download histology images from the Human Protein Atlas
HTML R Script 99. Code for figures from HPAanalyze paper
PDF   Reference Manual
Text   NEWS


biocViews CellBiology, Proteomics, Software, Visualization
Version 1.18.1
In Bioconductor since BioC 3.8 (R-3.5) (5 years)
License GPL-3 + file LICENSE
Depends R (>= 3.5.0)
Imports dplyr, openxlsx, ggplot2, tibble, xml2, stats, utils, gridExtra
Suggests knitr, rmarkdown, markdown, devtools, BiocStyle
URL https://github.com/anhtr/HPAanalyze
BugReports https://github.com/anhtr/HPAanalyze/issues
Depends On Me
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Source Package HPAanalyze_1.18.1.tar.gz
Windows Binary HPAanalyze_1.18.1.zip (64-bit only)
macOS Binary (x86_64) HPAanalyze_1.18.1.tgz
macOS Binary (arm64) HPAanalyze_1.18.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/HPAanalyze
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HPAanalyze
Bioc Package Browser https://code.bioconductor.org/browse/HPAanalyze/
Package Short Url https://bioconductor.org/packages/HPAanalyze/
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