GeneBreak

DOI: 10.18129/B9.bioc.GeneBreak  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see GeneBreak.

Gene Break Detection

Bioconductor version: 3.17

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Citation (from within R, enter citation("GeneBreak")):

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneBreak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")

 

PDF R Script GeneBreak
PDF   Reference Manual
Text   NEWS

Details

biocViews CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version 1.30.0
In Bioconductor since BioC 3.2 (R-3.2) (8 years)
License GPL-2
Depends R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports graphics, methods
LinkingTo
Suggests
SystemRequirements
Enhances
URL https://github.com/stefvanlieshout/GeneBreak
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GeneBreak_1.30.0.tar.gz
Windows Binary GeneBreak_1.30.0.zip
macOS Binary (x86_64) GeneBreak_1.30.0.tgz
macOS Binary (arm64) GeneBreak_1.30.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GeneBreak
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GeneBreak
Bioc Package Browser https://code.bioconductor.org/browse/GeneBreak/
Package Short Url https://bioconductor.org/packages/GeneBreak/
Package Downloads Report Download Stats

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