GSEAlm

DOI: 10.18129/B9.bioc.GSEAlm  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see GSEAlm.

Linear Model Toolset for Gene Set Enrichment Analysis

Bioconductor version: 3.17

Models and methods for fitting linear models to gene expression data, together with tools for computing and using various regression diagnostics.

Author: Assaf Oron, Robert Gentleman (with contributions from S. Falcon and Z. Jiang)

Maintainer: Assaf Oron <assaf at uw.edu>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GSEAlm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GSEAlm")

 

PDF	R Script	Linear models in GSEA
PDF		Reference Manual

Details

biocViews	Microarray, Software
Version	1.60.0
In Bioconductor since	BioC 2.2 (R-2.7) (15.5 years)
License	Artistic-2.0
Depends	Biobase
Imports
LinkingTo
Suggests	GSEABase, Category, multtest, ALL, annotate, hgu95av2.db, genefilter, GOstats, RColorBrewer
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GSEAlm_1.60.0.tar.gz
Windows Binary	GSEAlm_1.60.0.zip
macOS Binary (x86_64)	GSEAlm_1.60.0.tgz
macOS Binary (arm64)	GSEAlm_1.60.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GSEAlm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GSEAlm
Bioc Package Browser	https://code.bioconductor.org/browse/GSEAlm/
Package Short Url	https://bioconductor.org/packages/GSEAlm/
Package Downloads Report	Download Stats