DOI: 10.18129/B9.bioc.GOsummaries  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see GOsummaries.

Word cloud summaries of GO enrichment analysis

Bioconductor version: 3.17

A package to visualise Gene Ontology (GO) enrichment analysis results on gene lists arising from different analyses such clustering or PCA. The significant GO categories are visualised as word clouds that can be combined with different plots summarising the underlying data.

Author: Raivo Kolde <raivo.kolde at eesti.ee>

Maintainer: Raivo Kolde <raivo.kolde at eesti.ee>

Citation (from within R, enter citation("GOsummaries")):


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PDF R Script GOsummaries basics
PDF   Reference Manual
Text   NEWS


biocViews Clustering, GO, GeneExpression, Software, Visualization
Version 2.36.0
In Bioconductor since BioC 3.0 (R-3.1) (9 years)
License GPL (>= 2)
Depends R (>= 2.15), Rcpp
Imports plyr, grid, gProfileR, reshape2, limma, ggplot2, gtable
LinkingTo Rcpp
Suggests vegan
URL https://github.com/raivokolde/GOsummaries
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package GOsummaries_2.36.0.tar.gz
Windows Binary GOsummaries_2.36.0.zip
macOS Binary (x86_64) GOsummaries_2.36.0.tgz
macOS Binary (arm64) GOsummaries_2.36.0.tgz
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Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOsummaries
Bioc Package Browser https://code.bioconductor.org/browse/GOsummaries/
Package Short Url https://bioconductor.org/packages/GOsummaries/
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