DOI: 10.18129/B9.bioc.DeMixT  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see DeMixT.

Cell type-specific deconvolution of heterogeneous tumor samples with two or three components using expression data from RNAseq or microarray platforms

Bioconductor version: 3.17

DeMixT is a software package that performs deconvolution on transcriptome data from a mixture of two or three components.

Author: Zeya Wang <zw17.rice at>, Shaolong Cao<scao at>, Wenyi Wang <wwang7 at at>

Maintainer: Shuai Guo <shuai.guo at>

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biocViews Classification, Coverage, GeneExpression, Microarray, Sequencing, Software, StatisticalMethod, TissueMicroarray
Version 1.16.0
In Bioconductor since BioC 3.9 (R-3.6) (4.5 years)
License GPL-3
Depends R (>= 3.6.0), parallel, Rcpp (>= 1.0.0), SummarizedExperiment, knitr, KernSmooth, matrixcalc, rmarkdown, DSS, dendextend, psych, sva
Imports matrixStats, stats, truncdist, base64enc, ggplot2
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