DEGseq

DOI: 10.18129/B9.bioc.DEGseq  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see DEGseq.

Identify Differentially Expressed Genes from RNA-seq data

Bioconductor version: 3.17

DEGseq is an R package to identify differentially expressed genes from RNA-Seq data.

Author: Likun Wang <wanglk at hsc.pku.edu.cn> and Xi Wang <wang-xi05 at mails.tsinghua.edu.cn>.

Maintainer: Likun Wang <wanglk at hsc.pku.edu.cn>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("DEGseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DEGseq")

 

PDF	R Script	DEGseq
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GeneExpression, ImmunoOncology, Preprocessing, RNASeq, Software
Version	1.54.0
In Bioconductor since	BioC 2.5 (R-2.10) (14 years)
License	LGPL (>=2)
Depends	R (>= 2.8.0), qvalue, methods
Imports	graphics, grDevices, methods, stats, utils
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	DEGseq_1.54.0.tar.gz
Windows Binary	DEGseq_1.54.0.zip
macOS Binary (x86_64)	DEGseq_1.54.0.tgz
macOS Binary (arm64)	DEGseq_1.54.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/DEGseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/DEGseq
Bioc Package Browser	https://code.bioconductor.org/browse/DEGseq/
Package Short Url	https://bioconductor.org/packages/DEGseq/
Package Downloads Report	Download Stats