DOI: 10.18129/B9.bioc.CancerInSilico  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see CancerInSilico.

An R interface for computational modeling of tumor progression

Bioconductor version: 3.17

The CancerInSilico package provides an R interface for running mathematical models of tumor progresson and generating gene expression data from the results. This package has the underlying models implemented in C++ and the output and analysis features implemented in R.

Author: Thomas D. Sherman, Raymond Cheng, Elana J. Fertig

Maintainer: Thomas D. Sherman <tomsherman159 at>, Elana J. Fertig <ejfertig at>

Citation (from within R, enter citation("CancerInSilico")):


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biocViews BiomedicalInformatics, CellBiology, GeneExpression, ImmunoOncology, MathematicalBiology, RNASeq, SingleCell, Software, SystemsBiology
Version 2.20.0
In Bioconductor since BioC 3.4 (R-3.3) (7 years)
License GPL-2
Depends R (>= 3.4), Rcpp
Imports methods, utils, graphics, stats
LinkingTo Rcpp, BH
Suggests testthat, knitr, rmarkdown, BiocStyle, Rtsne, viridis, rgl, gplots
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