DOI: 10.18129/B9.bioc.BumpyMatrix  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BumpyMatrix.

Bumpy Matrix of Non-Scalar Objects

Bioconductor version: 3.17

Implements the BumpyMatrix class and several subclasses for holding non-scalar objects in each entry of the matrix. This is akin to a ragged array but the raggedness is in the third dimension, much like a bumpy surface - hence the name. Of particular interest is the BumpyDataFrameMatrix, where each entry is a Bioconductor data frame. This allows us to naturally represent multivariate data in a format that is compatible with two-dimensional containers like the SummarizedExperiment and MultiAssayExperiment objects.

Author: Aaron Lun [aut, cre], Genentech, Inc. [cph]

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

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HTML R Script The BumpyMatrix class
PDF   Reference Manual


biocViews DataRepresentation, Infrastructure, Software
Version 1.8.0
In Bioconductor since BioC 3.13 (R-4.1) (2.5 years)
License MIT + file LICENSE
Imports utils, methods, Matrix, S4Vectors, IRanges
Suggests BiocStyle, knitr, rmarkdown, testthat
URL https://bioconductor.org/packages/BumpyMatrix
BugReports https://github.com/LTLA/BumpyMatrix/issues
Depends On Me alabaster.bumpy
Imports Me CoreGx, MerfishData, MouseGastrulationData
Suggests Me ggspavis, SpatialExperiment, STexampleData
Links To Me
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Source Package BumpyMatrix_1.8.0.tar.gz
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