BiocHubsShiny

DOI: 10.18129/B9.bioc.BiocHubsShiny  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BiocHubsShiny.

View AnnotationHub and ExperimentHub Resources Interactively

Bioconductor version: 3.17

A package that allows interactive exploration of AnnotationHub and ExperimentHub resources. It uses DT / DataTable to display resources for multiple organisms. It provides template code for reproducibility and for downloading resources via the indicated Hub package.

Author: Marcel Ramos [aut, cre] , Vincent Carey [ctb]

Maintainer: Marcel Ramos <marcel.ramos at roswellpark.org>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BiocHubsShiny")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiocHubsShiny")

 

HTML	R Script	BiocHubsShiny Overview
PDF		Reference Manual
Text		NEWS

Details

biocViews	ShinyApps, Software
Version	1.0.0
In Bioconductor since	BioC 3.17 (R-4.3) (< 6 months)
License	Artistic-2.0
Depends	R (>= 4.3.0), shiny
Imports	AnnotationHub, ExperimentHub, DT, htmlwidgets, S4Vectors, shinyAce, shinyjs, shinythemes, shinytoastr, utils
LinkingTo
Suggests	BiocManager, BiocStyle, knitr, rmarkdown, sessioninfo, shinytest2
SystemRequirements
Enhances
URL	https://github.com/Bioconductor/BiocHubsShiny
BugReports	https://github.com/Bioconductor/BiocHubsShiny/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BiocHubsShiny_1.0.0.tar.gz
Windows Binary	BiocHubsShiny_1.0.0.zip
macOS Binary (x86_64)	BiocHubsShiny_1.0.0.tgz
macOS Binary (arm64)	BiocHubsShiny_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BiocHubsShiny
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BiocHubsShiny
Bioc Package Browser	https://code.bioconductor.org/browse/BiocHubsShiny/
Package Short Url	https://bioconductor.org/packages/BiocHubsShiny/
Package Downloads Report	Download Stats