BEAT

DOI: 10.18129/B9.bioc.BEAT  

This package is for version 3.17 of Bioconductor; for the stable, up-to-date release version, see BEAT.

BEAT - BS-Seq Epimutation Analysis Toolkit

Bioconductor version: 3.17

Model-based analysis of single-cell methylation data

Author: Kemal Akman <akman at mpipz.mpg.de>

Maintainer: Kemal Akman <akman at mpipz.mpg.de>

Installation

To install this package, start R (version "4.3") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("BEAT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BEAT")

 

PDF	R Script	Analysing single-cell BS-Seq data with the "BEAT" package
PDF		Reference Manual

Details

biocViews	DNAMethylation, Epigenetics, Genetics, ImmunoOncology, MethylSeq, Software
Version	1.38.0
In Bioconductor since	BioC 2.14 (R-3.1) (9.5 years)
License	LGPL (>= 3.0)
Depends	R (>= 2.13.0)
Imports	GenomicRanges, ShortRead, Biostrings, BSgenome
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BEAT_1.38.0.tar.gz
Windows Binary	BEAT_1.38.0.zip
macOS Binary (x86_64)	BEAT_1.38.0.tgz
macOS Binary (arm64)	BEAT_1.38.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/BEAT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BEAT
Bioc Package Browser	https://code.bioconductor.org/browse/BEAT/
Package Short Url	https://bioconductor.org/packages/BEAT/
Package Downloads Report	Download Stats